Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
72
accessible chromatin
63
target gene predictions
52
candidate regulatory elements
32
chromatin state
17
binding sites
14
eQTL
12
variant allelic effects
11
histone modifications
9
gene expression
2
Fine-mapped variants
2
differential activity
2
sQTL
Date released
86
September, 2022
53
February, 2021
24
November, 2021
23
February, 2024
20
January, 2021
19
May, 2021
8
August, 2021
8
June, 2020
7
August, 2018
6
March, 2023
6
May, 2020
6
October, 2019
4
August, 2017
4
January, 2022
4
March, 2020
3
January, 2020
3
October, 2022
2
November, 2019
1
April, 2019
1
June, 2021
Available data
232
bed bed3+
tsv
60
bigWig
27
bed bed9
14
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
csv
3
xls
2
bigBed bed9
Organism
288
Homo sapiens
Biosample type
125
primary cell
99
tissue
61
cell line
3
in vitro differentiated cells
Organ
625
epithelium
401
kidney
399
brain
395
connective tissue
361
musculature of body
310
lung
286
intestine
227
limb
226
heart
217
bodily fluid
206
blood
205
embryo
202
skin of body
202
vasculature
201
pancreas
172
large intestine
157
blood vessel
146
extraembryonic component
128
liver
117
stomach
107
eye
87
mammary gland
85
bone element
84
small intestine
81
uterus
77
prostate gland
73
placenta
72
adrenal gland
67
adipose tissue
64
penis
64
ureter
62
lymph node
59
artery
49
thymus
48
gonad
43
esophagus
38
spinal cord
33
spleen
25
testis
23
lymphoid tissue
22
ovary
22
thyroid gland
22
vein
19
nerve
18
mouth
18
skeleton
16
bronchus
16
lymphatic vessel
13
bone marrow
12
breast
12
pituitary gland
9
tongue
9
urinary bladder
9
vagina
5
trachea
4
nose
1
pericardium
Project
242
AMP
24
ENCODE
20
T1D
2
community
Genome assembly (visualization)
269
hg19
77
GRCh38
files.file_type!
tsv
BIOSAMPLE
TYPE
288 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
chromatin state
binding sites
eQTL
variant allelic effects
histone modifications
gene expression
Fine-mapped variants
differential activity
sQTL
primary cell
pancreatic ductal cell
6
3
1
1
2
1
mammary gland epithelial cell
1
4
3
3
1
1
pancreatic beta cell
8
3
1
1
pancreatic alpha cell
7
3
1
1
pancreatic acinar cell
6
3
1
1
+ See 11 more…
tissue
islet of Langerhans
6
1
3
2
13
1
1
2
2
2
pancreas
5
5
5
3
1
1
1
1
body of pancreas
5
8
4
1
endocrine pancreas
4
7
4
mammary gland
1
1
+ See 7 more…
cell line
MCF-7
1
6
9
5
3
2
EndoC_BH1
8
1
1
2
T47D
2
3
2
Panc1
2
2
1
8988T
1
1
1
+ See 4 more…
in vitro differentiated cells
mammary gland epithelial cell
1
1
1
See all biosamples
Download