Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
166
candidate regulatory elements
100
target gene predictions
84
chromatin state
39
accessible chromatin
21
binding sites
19
histone modifications
7
gene expression
3
eQTL
3
variant allelic effects
Date released
236
September, 2022
135
February, 2021
20
November, 2021
18
June, 2020
7
May, 2021
6
February, 2024
4
August, 2017
4
October, 2022
3
January, 2022
3
March, 2024
2
January, 2021
2
March, 2020
1
May, 2020
1
May, 2022
Available data
352
bed bed3+
79
bed bed9
21
bigWig
7
tsv
1
bed bed9+
Organism
442
Homo sapiens
Biosample type
256
tissue
102
cell line
78
primary cell
6
in vitro differentiated cells
Organ
949
epithelium
652
kidney
466
brain
458
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
420
AMP
20
ENCODE
2
T1D
Genome assembly (visualization)
432
hg19
112
GRCh38
BIOSAMPLE
TYPE
442 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
binding sites
histone modifications
gene expression
eQTL
variant allelic effects
tissue
small intestine
29
17
15
1
1
large intestine
27
14
13
1
1
sigmoid colon
10
7
5
1
transverse colon
8
5
4
1
1
Peyer's patch
7
3
3
1
+ See 28 more…
cell line
HT-29
2
2
1
1
1
1
MG63
2
1
1
1
1
1
SW480
2
1
1
1
1
1
HCT116
2
3
1
OCI-LY1
2
1
1
1
1
+ See 18 more…
primary cell
foreskin keratinocyte
11
4
4
foreskin fibroblast
6
2
1
1
4
2
colon epithelial cell
3
3
enterocyte
3
3
foreskin melanocyte
4
1
1
+ See 11 more…
in vitro differentiated cells
foreskin keratinocyte
1
1
1
foreskin melanocyte
1
1
1
See all biosamples
Download