Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
208
gene expression
196
candidate regulatory elements
98
chromatin state
98
target gene predictions
66
accessible chromatin
56
differential activity
21
binding sites
21
variant allelic effects
18
histone modifications
10
eQTL
6
Fine-mapped variants
2
caQTL
Date released
285
September, 2022
232
February, 2021
140
September, 2023
28
August, 2021
24
May, 2020
23
June, 2020
18
January, 2020
13
February, 2020
9
March, 2020
5
January, 2022
4
May, 2021
3
February, 2023
3
March, 2024
3
November, 2021
3
October, 2022
2
February, 2024
2
May, 2019
2
November, 2019
1
April, 2019
Available data
418
bed bed3+
263
tsv
98
bed bed9
87
txt
45
bigWig
4
bigBed bed9
Organism
800
Homo sapiens
Biosample type
358
tissue
343
primary cell
98
cell line
1
in vitro differentiated cells
Organ
949
epithelium
652
kidney
466
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
657
AMP
140
KPMP
3
ENCODE
Genome assembly (visualization)
523
hg19
147
GRCh38
BIOSAMPLE
TYPE
800 results
search-icon
table-tab-icon
Clear Filters
gene expression
candidate regulatory elements
chromatin state
target gene predictions
accessible chromatin
differential activity
binding sites
variant allelic effects
histone modifications
eQTL
Fine-mapped variants
caQTL
tissue
kidney
7
29
16
14
10
1
1
2
1
right kidney
20
10
10
1
1
renal cortex interstitium
20
9
9
1
1
renal pelvis
19
9
9
2
1
left kidney
18
9
9
+ See 21 more…
primary cell
epithelial cell of proximal tubule
16
2
1
1
1
1
1
glomerular endothelial cell
14
2
1
1
2
1
glomerular visceral epithelial cell
5
2
1
1
2
kidney tubule cell
1
3
2
2
2
epithelial cell of prostate
4
2
3
+ See 70 more…
cell line
22Rv1
4
2
2
1
1
HEK293
3
1
1
1
2
1
LNCaP clone FGC
3
2
2
PC-3
2
1
1
1
1
1
RWPE1
2
1
1
1
1
1
+ See 18 more…
in vitro differentiated cells
renal cell carcinoma
1
See all biosamples
Download