Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
202
candidate regulatory elements
129
target gene predictions
115
chromatin state
61
histone modifications
57
accessible chromatin
39
Fine-mapped variants
36
binding sites
34
eQTL
22
gene expression
18
variant allelic effects
Date released
306
September, 2022
187
February, 2021
41
March, 2020
31
June, 2020
30
January, 2020
22
January, 2022
19
February, 2020
19
May, 2020
17
May, 2021
11
October, 2022
10
November, 2021
7
August, 2017
4
May, 2019
3
March, 2024
3
September, 2023
2
February, 2024
1
November, 2019
Available data
503
bed bed3+
108
bed bed9
74
tsv
26
bigWig
6
bigBed bed9
Organism
712
Homo sapiens
Biosample type
410
tissue
150
cell line
139
primary cell
13
in vitro differentiated cells
1
stem cell
Organ
949
epithelium
652
kidney
466
brain
458
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
703
AMP
10
ENCODE
Genome assembly (visualization)
663
hg19
212
GRCh38
BIOSAMPLE
TYPE
713 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
histone modifications
accessible chromatin
Fine-mapped variants
binding sites
eQTL
gene expression
variant allelic effects
tissue
brain
29
16
18
3
2
1
2
1
1
spinal cord
14
8
7
1
1
caudate nucleus
5
3
4
1
2
3
2
1
1
substantia nigra
5
2
3
1
3
3
1
cerebellum
3
2
2
1
1
3
2
2
+ See 65 more…
cell line
SK-N-DZ
4
2
2
1
1
SK-N-SH
4
3
2
1
pituitary stalk
10
SK-N-MC
2
1
1
1
1
2
BE(2)-C
1
1
1
1
1
2
+ See 30 more…
primary cell
foreskin keratinocyte
11
4
4
keratinocyte
3
5
3
2
2
1
1
foreskin fibroblast
6
2
1
2
1
4
fibroblast of dermis
4
4
3
1
dermis blood vessel endothelial cell
6
2
2
+ See 18 more…
in vitro differentiated cells
foreskin keratinocyte
1
1
1
iPS DF 4.7 Cell Line
1
1
1
dermis microvascular lymphatic vessel endothelial cell
1
1
hippocampal neuron
1
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
+ See 2 more…
stem cell
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download