Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
85
candidate regulatory elements
53
target gene predictions
44
chromatin state
8
binding sites
5
histone modifications
4
eQTL
3
Fine-mapped variants
3
accessible chromatin
3
gene expression
Date released
122
September, 2022
55
February, 2021
June, 2020
6
May, 2021
6
November, 2021
4
March, 2020
3
August, 2017
3
February, 2024
3
January, 2022
2
March, 2024
2
October, 2022
1
February, 2020
1
January, 2020
Available data
157
bed bed3+
41
bed bed9
7
tsv
3
bigWig
Organism
208
Homo sapiens
Biosample type
166
tissue
32
cell line
10
primary cell
Organ
924
epithelium
637
kidney
445
brain
440
connective tissue
369
musculature of body
305
lung
279
intestine
273
pancreas
260
vasculature
250
heart
238
limb
206
bodily fluid
205
embryo
200
blood vessel
196
skin of body
195
blood
167
large intestine
151
liver
140
extraembryonic component
116
stomach
103
eye
88
adipose tissue
84
bone element
83
mammary gland
83
small intestine
81
uterus
73
prostate gland
72
adrenal gland
72
artery
71
placenta
63
ureter
61
penis
54
lymph node
48
thymus
46
gonad
43
esophagus
41
spinal cord
33
spleen
24
nerve
24
testis
22
lymphoid tissue
22
ovary
22
thyroid gland
22
vein
20
lymphatic vessel
18
mouth
18
skeleton
15
bronchus
13
bone marrow
13
pituitary gland
12
breast
10
vagina
9
tongue
9
urinary bladder
4
trachea
3
nose
1
pericardium
Project
202
AMP
6
ENCODE
Genome assembly (visualization)
202
hg19
56
GRCh38
month_released!
June, 2020
BIOSAMPLE
TYPE
208 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
binding sites
histone modifications
eQTL
Fine-mapped variants
accessible chromatin
gene expression
tissue
large intestine
27
14
13
1
spinal cord
14
8
7
1
sigmoid colon
10
7
5
transverse colon
8
5
4
1
colonic mucosa
4
2
3
1
+ See 9 more…
cell line
HT-29
2
2
1
1
1
HCT116
2
3
1
SW480
2
1
1
1
1
HCT-116 cell
1
2
RKO
1
1
1
+ See 4 more…
primary cell
colon epithelial cell
3
3
astrocyte of the spinal cord
2
1
1
See all biosamples
Download