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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
164
candidate regulatory elements
target gene predictions
83
chromatin state
29
accessible chromatin
9
histone modifications
6
binding sites
5
gene expression
5
variant allelic effects
4
eQTL
Date released
155
September, 2022
100
February, 2021
16
November, 2021
13
June, 2020
6
February, 2024
5
August, 2017
5
March, 2024
4
January, 2022
1
October, 2022
Available data
218
bed bed3+
78
bed bed9
16
bigWig
5
tsv
Organism
305
Homo sapiens
Biosample type
257
tissue
26
cell line
22
primary cell
Organ
827
epithelium
577
kidney
390
brain
382
connective tissue
295
musculature of body
235
vasculature
233
lung
233
pancreas
216
intestine
206
heart
195
limb
179
blood vessel
161
bodily fluid
160
skin of body
152
blood
135
liver
131
embryo
130
large intestine
110
extraembryonic component
100
eye
89
stomach
76
adipose tissue
73
bone element
68
mammary gland
67
artery
63
prostate gland
61
small intestine
56
placenta
53
lymph node
53
penis
52
adrenal gland
51
ureter
39
gonad
35
esophagus
35
thymus
34
spinal cord
26
spleen
25
uterus
22
nerve
22
testis
19
vein
18
lymphatic vessel
18
lymphoid tissue
17
thyroid gland
16
ovary
15
mouth
15
skeleton
13
bronchus
10
bone marrow
10
breast
8
tongue
8
vagina
7
urinary bladder
5
trachea
3
nose
3
pituitary gland
1
pericardium
Project
289
AMP
16
ENCODE
Genome assembly (visualization)
296
hg19
98
GRCh38
annotation_type!
target gene predictions
BIOSAMPLE
TYPE
305 results
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candidate regulatory elements
chromatin state
accessible chromatin
histone modifications
binding sites
gene expression
variant allelic effects
eQTL
tissue
stomach
40
19
3
1
1
1
small intestine
29
15
1
1
large intestine
27
13
1
1
sigmoid colon
10
5
1
transverse colon
8
4
1
1
+ See 20 more…
cell line
HT-29
2
1
1
1
1
SW480
2
1
1
1
1
RKO
1
1
1
1
HCT-116 cell
1
2
HCT116
2
1
+ See 3 more…
primary cell
enterocyte
3
3
colon epithelial cell
3
enteric smooth muscle cell
2
parietal cell
1
1
peptic cell
1
1
+ See 7 more…
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