Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
175
candidate regulatory elements
145
target gene predictions
88
chromatin state
36
accessible chromatin
19
binding sites
17
gene expression
14
histone modifications
9
Fine-mapped variants
8
eQTL
8
variant allelic effects
Date released
249
September, 2022
129
February, 2021
51
February, 2024
19
June, 2020
11
March, 2020
11
May, 2021
10
May, 2020
8
August, 2021
7
January, 2020
6
February, 2020
5
January, 2022
3
March, 2024
3
November, 2019
2
May, 2019
2
November, 2021
2
October, 2022
1
August, 2017
Available data
398
bed bed3+
87
bed bed9
29
tsv
17
bigWig
4
bigBed bed9
Organism
519
Homo sapiens
Biosample type
323
tissue
141
cell line
30
in vitro differentiated cells
24
primary cell
1
stem cell
Organ
949
epithelium
652
kidney
466
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
517
AMP
2
ENCODE
Genome assembly (visualization)
497
hg19
172
GRCh38
BIOSAMPLE
TYPE
519 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
binding sites
gene expression
histone modifications
Fine-mapped variants
eQTL
variant allelic effects
tissue
muscle of arm
33
16
16
1
1
muscle of leg
27
14
15
2
spleen
15
8
6
2
1
1
1
tibial nerve
6
3
4
3
2
3
2
2
tibial artery
3
2
3
3
1
3
2
2
+ See 26 more…
cell line
H1-hESC
1
39
1
1
2
8
1
H9
7
8
1
GM23248
2
1
1
1
1
1
H7-hESC
1
2
1
1
1
HUES6
2
1
1
1
1
+ See 17 more…
in vitro differentiated cells
endodermal cell
4
2
2
mesodermal cell
4
1
1
1
trophoblast cell
2
2
1
ectodermal cell
2
1
1
cardiac mesoderm primordium
1
1
1
+ See 3 more…
primary cell
trophoblast cell
7
5
4
1
1
primordial germ cell
1
1
Leydig cell
1
fibroblast of arm
1
placental hematopoietic stem cell
1
+ See 1 more…
stem cell
H1-hESC
1
See all biosamples
Download