Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
147
target gene predictions
139
candidate regulatory elements
86
chromatin state
52
accessible chromatin
51
histone modifications
43
eQTL
42
Fine-mapped variants
34
gene expression
22
binding sites
20
variant allelic effects
2
differential activity
Date released
216
September, 2022
143
February, 2021
54
February, 2024
46
March, 2020
33
January, 2020
24
June, 2020
23
February, 2020
22
January, 2022
22
May, 2020
16
May, 2021
8
August, 2017
7
October, 2022
6
August, 2021
4
May, 2019
3
March, 2024
3
September, 2023
2
November, 2021
2
September, 2018
1
January, 2018
1
November, 2019
1
November, 2022
Available data
434
bed bed3+
91
tsv
78
bed bed9
27
bigWig
7
bigBed bed9
Organism
637
Homo sapiens
Biosample type
446
tissue
145
cell line
41
primary cell
5
in vitro differentiated cells
1
stem cell
Organ
949
epithelium
652
kidney
466
brain
458
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
636
AMP
2
ENCODE
Genome assembly (visualization)
572
hg19
233
GRCh38
2
hg18
BIOSAMPLE
TYPE
638 results
search-icon
table-tab-icon
Clear Filters
target gene predictions
candidate regulatory elements
chromatin state
accessible chromatin
histone modifications
eQTL
Fine-mapped variants
gene expression
binding sites
variant allelic effects
differential activity
tissue
brain
16
29
18
2
3
2
1
1
1
adipose tissue
8
7
6
2
4
3
1
1
caudate nucleus
3
5
4
2
1
2
3
1
1
subcutaneous adipose tissue
2
1
2
6
3
5
1
1
omental fat pad
2
5
2
2
2
3
2
+ See 68 more…
cell line
HeLa-S3
55
5
3
1
SK-N-DZ
2
4
2
1
1
SK-N-SH
3
4
2
1
pituitary stalk
10
SK-N-MC
1
2
1
1
1
2
+ See 13 more…
primary cell
choroid plexus epithelial cell
1
2
1
1
1
1
astrocyte of the cerebellum
1
2
1
1
1
astrocyte of the hippocampus
1
2
1
1
1
cardiac fibroblast
3
2
brain microvascular endothelial cell
1
2
1
1
+ See 7 more…
in vitro differentiated cells
hippocampal neuron
1
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
white adipose cell
1
stem cell
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download