Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
215
accessible chromatin
180
target gene predictions
177
gene expression
109
candidate regulatory elements
92
differential activity
57
chromatin state
47
binding sites
41
variant allelic effects
30
histone modifications
4
eQTL
2
caQTL
Date released
163
September, 2022
155
September, 2023
140
February, 2021
129
November, 2021
127
February, 2024
38
March, 2023
36
May, 2021
27
June, 2020
20
January, 2021
15
May, 2020
15
November, 2022
14
January, 2020
12
February, 2023
11
August, 2021
9
February, 2020
7
April, 2020
7
October, 2022
6
August, 2018
6
March, 2020
5
October, 2019
4
March, 2024
3
August, 2017
2
May, 2022
1
January, 2022
1
July, 2020
1
November, 2019
Available data
623
bed bed3+
326
tsv
177
bigWig
txt
54
bed bed9
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
954
Homo sapiens
Biosample type
746
primary cell
108
cell line
74
tissue
26
in vitro differentiated cells
Organ
871
epithelium
565
kidney
466
brain
451
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
264
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
641
AMP
155
KPMP
129
ENCODE
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
680
hg19
292
GRCh38
files.file_type!
txt
BIOSAMPLE
TYPE
954 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
gene expression
candidate regulatory elements
differential activity
chromatin state
binding sites
variant allelic effects
histone modifications
eQTL
caQTL
primary cell
endothelial cell
15
7
6
2
2
1
1
2
hepatocyte
8
3
13
1
1
1
2
4
endothelial cell of umbilical vein
2
4
6
5
2
1
foreskin keratinocyte
4
11
4
pancreatic ductal cell
6
3
3
3
1
1
2
+ See 135 more…
cell line
HeLa-S3
55
5
3
1
EndoC_BH1
8
1
8
3
1
keratinocyte
3
1
choroid plexus epithelial cell
1
1
1
colon epithelial cell
1
1
1
+ See 8 more…
tissue
pigmented layer of retina
20
breast epithelium
1
3
5
2
esophagus squamous epithelium
1
2
6
2
uterus
1
2
1
3
1
1
endometrium cancer
1
1
+ See 19 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte
1
2
1
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
+ See 4 more…
See all biosamples
Download