Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
164
candidate regulatory elements
99
target gene predictions
97
chromatin state
71
accessible chromatin
59
gene expression
30
binding sites
25
variant allelic effects
24
histone modifications
19
differential activity
18
Fine-mapped variants
17
eQTL
4
caQTL
Date released
253
September, 2022
132
February, 2021
35
September, 2023
32
February, 2024
28
March, 2020
25
May, 2020
24
January, 2020
16
June, 2020
12
February, 2020
11
August, 2021
9
May, 2021
9
November, 2021
5
January, 2022
5
November, 2019
5
October, 2022
4
August, 2017
4
February, 2023
4
March, 2023
3
April, 2020
3
May, 2019
2
March, 2024
2
May, 2022
2
October, 2019
1
July, 2020
1
September, 2018
Available data
417
bed bed3+
96
tsv
93
bed bed9
60
bigWig
12
bigBed bed9
3
csv
2
txt
1
bam
Organism
627
Homo sapiens
Biosample type
359
tissue
213
primary cell
46
cell line
9
in vitro differentiated cells
Organ
949
epithelium
652
kidney
466
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
580
AMP
35
KPMP
9
ENCODE
3
LungMap
Genome assembly (visualization)
536
hg19
199
GRCh38
2
hg18
BIOSAMPLE
TYPE
627 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
gene expression
binding sites
variant allelic effects
histone modifications
differential activity
Fine-mapped variants
eQTL
caQTL
tissue
muscle of arm
33
16
16
1
1
muscle of leg
27
14
15
2
liver
13
10
9
4
1
1
2
1
7
1
tibial nerve
6
3
4
3
2
2
3
2
coronary artery
3
3
3
3
1
2
3
2
1
+ See 28 more…
primary cell
hepatocyte
1
3
1
8
13
1
2
4
endothelial cell of umbilical vein
6
4
5
2
2
1
endothelial cell of hepatic sinusoid
6
4
6
dermis blood vessel endothelial cell
6
2
2
hepatic stellate cell
1
1
1
3
1
1
1
+ See 31 more…
cell line
HepG2
2
3
2
2
3
5
GM23248
2
1
1
1
1
1
HuH-7
1
1
1
1
1
1
smooth muscle cell of the coronary artery
1
1
1
1
HuH-7.5
1
1
1
+ See 4 more…
in vitro differentiated cells
hepatocyte
2
1
1
hepatocyte(AFP)
3
dermis microvascular lymphatic vessel endothelial cell
1
1
See all biosamples
Download