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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
459
gene expression
416
accessible chromatin
359
target gene predictions
313
candidate regulatory elements
203
histone modifications
187
chromatin state
149
differential activity
91
binding sites
77
variant allelic effects
46
eQTL
11
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
457
September, 2022
441
February, 2021
325
November, 2021
281
September, 2023
254
May, 2021
127
February, 2024
56
January, 2021
51
March, 2023
48
June, 2020
40
May, 2022
39
August, 2021
38
May, 2020
37
January, 2022
30
October, 2022
21
January, 2020
19
April, 2020
16
February, 2020
9
August, 2018
9
November, 2022
7
October, 2019
6
August, 2017
4
February, 2023
3
November, 2020
2
May, 2024
1
June, 2021
1
March, 2020
1
March, 2024
Available data
1480
bed bed3+
573
tsv
343
bigWig
154
bed bed9
108
txt
27
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
2323
Homo sapiens
Biosample type
2494
tissue
2323
primary cell
2321
cell line
458
in vitro differentiated cells
4
stem cell
Organ
819
epithelium
309
kidney
283
connective tissue
169
vasculature
126
pancreas
114
blood vessel
100
skin of body
liver
50
musculature of body
46
mammary gland
41
penis
extraembryonic component
35
brain
34
lung
31
heart
29
artery
23
eye
23
intestine
22
embryo
20
vein
17
lymphatic vessel
16
bronchus
14
bone element
13
bone marrow
11
adrenal gland
11
stomach
10
esophagus
10
placenta
10
prostate gland
9
blood
9
bodily fluid
6
large intestine
5
trachea
5
uterus
4
gonad
4
mouth
4
small intestine
4
spinal cord
3
thyroid gland
2
ovary
1
adipose tissue
1
limb
1
pericardium
1
testis
1
thymus
Project
1637
AMP
325
ENCODE
281
KPMP
59
T1D
19
LungMap
2
community
Genome assembly (visualization)
1678
hg19
660
GRCh38
organ_slims!
liver
extraembryonic component
BIOSAMPLE
TYPE
2323 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
target gene predictions
candidate regulatory elements
histone modifications
chromatin state
differential activity
binding sites
variant allelic effects
eQTL
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
15
16
2
86
1
4
2
1
1
common myeloid progenitor, CD34-positive
14
27
13
CD8-positive, alpha-beta T cell
3
2
5
7
30
1
endothelial cell
9
15
7
1
2
2
1
2
B cell
2
4
10
14
8
CD4-positive, alpha-beta memory T cell
9
14
9
CD14-positive monocyte
19
8
4
fibroblast
16
4
1
6
2
macrophage
2
12
3
3
7
1
regulatory T cell
7
3
4
5
1
3
1
2
epithelial cell of proximal tubule
16
1
1
2
1
1
1
CD8-positive, alpha-beta memory T cell
7
8
7
T cell
6
4
4
4
2
2
pericyte cell
10
10
1
1
T-helper 1 cell
7
1
3
6
3
1
glomerular endothelial cell
14
2
1
2
1
1
endothelial cell of umbilical vein
2
4
6
5
2
1
mononuclear cell
6
7
6
1
natural killer cell
2
2
5
6
1
3
1
smooth muscle cell
1
9
6
2
1
1
T-helper 17 cell
7
3
5
3
1
foreskin keratinocyte
4
11
4
pancreatic ductal cell
3
6
3
2
3
1
1
pancreatic beta cell
3
8
3
3
1
astrocyte
1
8
4
2
1
1
keratinocyte
2
5
3
2
3
1
1
osteoblast
2
5
2
2
2
1
3
pancreatic alpha cell
3
7
3
3
1
fibroblast of lung
4
6
4
2
foreskin fibroblast
1
2
6
2
1
4
pancreatic acinar cell
3
6
3
3
1
pancreatic delta cell
3
5
4
3
1
skeletal muscle myoblast
1
2
2
4
1
3
2
1
CD4-positive, alpha-beta T cell
1
3
8
3
T-helper 2 cell
3
3
5
3
1
neutrophil
3
4
2
2
2
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
1
2
4
2
1
1
1
1
mammary epithelial cell
1
1
3
3
1
4
mammary gland epithelial cell
1
4
3
3
1
1
neurosphere
3
7
3
skeletal muscle satellite cell
2
5
2
2
2
bronchial epithelial cell
1
2
4
1
2
2
excitatory neuron
12
fibroblast of cardiac tissue
2
4
3
3
fibroblast of dermis
4
4
3
1
erythroblast
5
2
2
2
glomerular visceral epithelial cell
5
2
1
2
1
dermis blood vessel endothelial cell
2
6
2
kidney tubule cell
1
2
2
3
2
retinal pigment epithelial cell
3
1
2
1
1
2
epithelial cell of prostate
3
4
2
mature neutrophil
1
7
1
naive T cell
3
3
3
skeletal muscle fiber
2
5
2
skin fibroblast
2
3
2
2
fibroblast of breast
2
4
2
fibroblast of mammary gland
1
1
2
1
1
2
fibroblast of pulmonary artery
1
1
2
1
1
2
glutamatergic neuron
6
2
kidney glomerular epithelial cell
1
2
1
2
1
1
myoepithelial cell of mammary gland
2
4
2
pancreatic stellate cell
2
2
1
3
renal cortical epithelial cell
1
2
1
2
1
1
CD1c-positive myeloid dendritic cell
1
1
2
1
1
1
cardiac muscle cell
1
1
2
1
2
choroid plexus epithelial cell
1
1
2
1
1
1
kidney epithelial cell
1
1
1
2
1
1
kidney interstitial cell
6
1
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
2
3
1
1
memory B cell
3
2
2
mesangial cell
5
2
mesenchymal stem cell
1
2
1
1
1
1
naive thymus-derived CD8-positive, alpha-beta T cell
3
1
2
1
pulmonary artery endothelial cell
1
1
2
1
1
1
type I muscle cell
1
3
1
1
1
type II muscle cell
1
3
1
1
1
type II pneumocyte
4
2
1
T-cell
2
4
alternatively activated macrophage
1
1
4
astrocyte of the cerebellum
1
1
2
1
1
astrocyte of the hippocampus
1
1
2
1
1
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
dermis lymphatic vessel endothelial cell
2
2
2
enterocyte
3
3
epithelial cell of esophagus
1
2
1
2
foreskin melanocyte
1
4
1
mast cell
1
1
1
1
1
1
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
2
2
1
1
peripheral blood mononuclear cell
4
1
1
skeletal muscle cell
1
1
2
1
1
smooth muscle cell of the brain vasculature
1
1
2
1
1
cardiac fibroblast
3
2
Adaptive / Maladaptive / Repairing Fibroblast
3
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
2
Afferent / Efferent Arteriole Endothelial Cell
3
2
B Cell
3
2
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
1
2
2
Classical Dendritic Cell
3
2
Connecting Tubule Cell
3
2
Connecting Tubule Intercalated Cell Type A
3
2
Connecting Tubule Principal Cell
3
2
Cortical Thick Ascending Limb Cell
3
2
Cycling Endothelial Cell
3
2
Cycling Epithelial Cell
3
2
Cycling T Cell
3
2
Cytotoxic T Cell
3
2
Degenerative Connecting Tubule Cell
3
2
Degenerative Connecting Tubule Cell / Principal Cell
3
2
Degenerative Cortical Thick Ascending Limb Cell
3
2
Degenerative Distal Convoluted Tubule Cell
3
2
Degenerative Intercalated Cell Type A
3
2
Degenerative Peritubular Capillary Endothelial Cell
3
2
Degenerative Principal Cell
3
2
Degenerative Proximal Tubule Epithelial Cell
3
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
2
Degenerative Vascular Smooth Muscle Cell
3
2
Descending Thin Limb Cell Type 1
3
2
Distal Convoluted Tubule Cell Type 1
3
2
Fibroblast
3
2
Glomerular Capillary Endothelial Cell
3
2
Intercalated Cell Type A
3
2
Intercalated Cell Type B
3
2
Lymphatic Endothelial Cell
3
2
M2 Macrophage
3
2
Medullary Thick Ascending Limb Cell
3
2
Mesangial Cell
3
2
Monocyte
3
2
Monocyte-derived Cell
3
2
Myofibroblast
3
2
Natural Killer T Cell
3
2
Natural Killer T Cell Type 1
3
2
Natural Killer T Cell Type 2
3
2
Non-Classical Monocyte
3
2
Parietal Epithelial Cell
3
2
Peritubular Capillary Endothelial Cell
3
2
Plasma Cell
3
2
Plasmacytoid Dendritic Cell
3
2
Podocyte
3
2
Principal Cell
3
2
Proximal Tubule Epithelial Cell Segment 1 and 2
3
2
Proximal Tubule Epithelial Cell Segment 3
3
2
Regulatory T Cell
3
2
Renin-positive Juxtaglomerular Granular Cell
3
2
T Cell
3
2
Transitional Principal-Intercalated Cell
3
2
Vascular Smooth Muscle Cell / Pericyte
3
2
basal cell
2
1
2
brain microvascular endothelial cell
1
1
2
1
fibroblast of peridontal ligament
1
1
2
1
fibroblast of the aortic adventitia
1
2
1
1
gabaergic neuron
3
2
inflammatory macrophage
1
1
3
inhibitory neuron
5
iris pigment epithelial cell
1
1
2
1
kidney capillary endothelial cell
1
1
1
1
1
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
4
1
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
1
3
1
myofibroblast cell
1
1
3
non-pigmented ciliary epithelial cell
1
1
2
1
plasma cell
1
1
1
1
1
tracheal epithelial cell
1
2
2
activated CD4-positive, alpha-beta T cell
1
2
1
acute myeloid leukemia cell
2
2
adipocyte
1
2
1
adult endothelial progenitor cell
3
1
aortic adventitial fibroblast
1
1
2
aortic endothelial cell
2
1
1
astrocyte of the spinal cord
1
2
1
blood vessel smooth muscle cell
2
2
cardiac fibroblast
3
1
endothelial cell of lymphatic vessel
3
1
enteric smooth muscle cell
2
2
fibroblast of gingiva
1
2
1
fibroblast of the conjunctiva
1
2
1
gamma-delta T cell
4
kidney connecting tubule epithelial cell
4
leukocyte
2
2
megakaryocyte
2
2
mesothelial cell
2
1
1
naive B cell
1
1
2
nephron progenitor
4
pancreatic MUC5B+ductal cell
1
3
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic gamma+epsilon cell
1
3
pancreatic macrophage cell
1
3
pancreatic mast cell
1
3
preadipocyte
1
2
1
renal epithelial cell
1
1
2
smooth muscle cell of the esophagus
2
2
stromal cell of bone marrow
1
2
1
type I pneumocyte
3
1
vascular associated smooth muscle cell
2
2
Cycling Mononuclear Phagocyte
3
Ishikawa
1
1
1
Mast Cell
3
S-shaped body
3
Schwann cell
1
2
T follicular helper cell
2
1
Th1 cell
1
1
1
Th17 cell
1
1
1
activated CD8-positive, alpha-beta T cell
1
1
1
blood cell
3
bone marrow cell
2
1
brain pericyte
1
1
1
central memory CD8-positive, alpha-beta T cell
3
ciliated cell
2
1
club cell
2
1
effector memory CD8-positive, alpha-beta T cell
3
endocardial cell
2
1
enteric neuron
2
1
epidermal melanocyte
1
1
1
erythroid cell
1
1
1
glial cell
1
2
goblet cell
1
2
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
mammary stem cell
1
1
1
meso-epithelial cell
1
1
1
microglial cell
1
1
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive B cel
2
1
naive t cell
1
1
1
neoplastic cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic A cell
3
pancreatic quiescent stellate cell
3
parietal cell
1
1
1
peptic cell
1
1
1
peripheral blood stem cell
1
1
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
regular cardiac myocyte
1
1
1
schwann cell
2
1
smooth muscle cell of the coronary artery
1
1
1
thyroid follicular cell
1
1
1
type B pancreatic cell
3
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
1
Kupffer cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
1
1
Th2 cell
1
1
alveolar macrophage
1
1
articular chondrocyte
2
basal cell of epidermis
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
cardiac muscle myoblast
1
1
cholangiocyte
1
1
chronic lymphocytic leukemia cell
1
1
colon goblet cell
1
1
columnar chondrocyte
1
1
conventional dendritic cell
1
1
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
1
1
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD4-positive, alpha-beta T cell
1
1
endothelial cell of coronary artery
1
1
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
erythroid progenitor cell
1
1
extracellular matrix secreting cell
2
fat cell
1
1
fetal cardiomyocyte
2
foveolar cell of stomach
1
1
granular cell of epidermis
1
1
head and neck squamous cell carcinoma
1
1
intestinal tuft cell
1
1
kidney inner medulla collecting duct intercalated cell
2
leukemic stem cell
1
1
luteal cell
1
1
mantle cell lymphoma cell
2
mature NK T cell
1
1
mature natural killer cell
2
melanocyte
1
1
memory T cell
2
memory regulatory T cell
2
myoepithelial cell
1
1
natural killer cell mediated cytotoxicity
1
1
neural cell
1
1
neuron
2
neuronal stem cell
1
1
non keratinizing barrier epithelial cell
1
1
non-classical monocyte
1
1
pancreatic endocrine cell
1
1
paneth cell
1
1
peripheral blood-derived erythroblast
2
plasmacytoid dendritic cell
1
1
primordial germ cell
1
1
prostate gland cancer cell
1
1
regular atrial cardiac myocyte
1
1
renal principal cell
1
1
renal proximal tubule cell
1
1
renal vesicle
2
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
small cell ovarian carcinoma cell
1
1
small intestine goblet cell
1
1
somatic muscle myotube
1
1
stellate neuron
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
ureteric bud
1
1
uterine smooth muscle cell
1
1
ventricular cardiac muscle cell
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated pancreatic stellate cell
1
acute myeloid leukemia
1
alpha-beta T cell
1
alveolar cell type II
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
cell
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colorectal cancer
1
cytotoxic T cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of artery
1
enteroendocrine cell
1
epithelial cell of distal tubule
1
erythrocyte
1
erythroid lineage cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gastric goblet cell
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
helper T cell
1
hepatoblast
1
induced T-regulatory cell
1
intestinal epithelial cell
1
islet of Langerhans
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature B cell
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
metanephros
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid dendritic cell
1
myeloid leukocyte
1
naive regulatory T cell
1
neural progenitor cell
1
neuroendocrine cell
1
neutrophil progenitor cell
1
non-neuronal cell
1
pancreatic cell
1
pancreatic endothelial cell
1
pancreatic epsilon cell
1
pancreatic immune cell
1
parietal epithelial cell
1
pericardium fibroblast
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
progenitor cell
1
proximal tubule
1
proximal tubule cells with injury markers
1
quiescent pancreatic stellate cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal intercalated cell
1
retinal bipolar neuron
1
seminoma cell
1
sensory neuron
1
somatic gonadal cell
1
sperm
1
sympathetic neuron
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
urinary bladder cancer cell
1
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