Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1671
candidate regulatory elements
1243
target gene predictions
977
histone modifications
817
binding sites
674
gene expression
384
accessible chromatin
170
eQTL
167
differential activity
135
variant allelic effects
75
chromatin state
74
Fine-mapped variants
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
pQTL
2
other
1
representative DNase hypersensitivity sites
Date released
2576
February, 2021
1674
September, 2022
371
May, 2021
340
February, 2024
289
June, 2020
286
September, 2023
128
March, 2020
108
August, 2021
102
January, 2022
101
October, 2022
97
May, 2020
70
March, 2023
63
February, 2020
42
May, 2022
35
August, 2017
33
November, 2022
30
March, 2024
28
January, 2021
18
January, 2020
12
February, 2023
9
August, 2018
2
January, 2018
2
May, 2024
1
April, 2019
1
August, 2020
1
August, 2022
1
July, 2020
1
November, 2019
1
November, 2020
Available data
5544
bed bed3+
899
tsv
bed bed9
bigWig
108
txt
40
bigBed bed9
34
bed bed9+
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
6423
Homo sapiens
Biosample type
2169
cell line
2046
tissue
1785
primary cell
418
in vitro differentiated cells
4
stem cell
Organ
674
epithelium
540
kidney
378
brain
346
connective tissue
285
musculature of body
229
lung
215
intestine
203
vasculature
200
pancreas
193
bodily fluid
186
embryo
184
blood
184
heart
180
limb
160
skin of body
155
blood vessel
135
large intestine
118
liver
110
extraembryonic component
87
stomach
77
uterus
76
adipose tissue
67
mammary gland
65
bone element
65
prostate gland
64
eye
61
small intestine
59
artery
55
placenta
54
lymph node
54
penis
49
adrenal gland
48
ureter
40
gonad
37
thymus
35
spinal cord
34
esophagus
27
spleen
22
testis
19
lymphoid tissue
19
nerve
18
vein
17
ovary
17
thyroid gland
15
lymphatic vessel
15
mouth
13
pituitary gland
11
breast
11
bronchus
10
bone marrow
8
tongue
8
urinary bladder
8
vagina
7
skeleton
5
trachea
3
nose
1
pericardium
Project
6095
AMP
281
KPMP
ENCODE
31
T1D
11
community
5
ITG
Genome assembly (visualization)
5446
hg19
515
GRCh38
4
hg18
files.file_type!
bed bed9
bigWig
award.project!
ENCODE
BIOSAMPLE
TYPE
6423 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
gene expression
accessible chromatin
eQTL
differential activity
variant allelic effects
chromatin state
Fine-mapped variants
caQTL
hQTL
sQTL
variant to gene
meQTL
pQTL
other
representative DNase hypersensitivity sites
cell line
HeLa-S3
5
55
1
H1-hESC
1
39
1
2
8
1
A549
21
19
1
2
1
K562
7
23
1
2
1
1
EndoC_BH1
1
1
1
8
7
3
1
+ See 765 more…
tissue
stomach
40
21
1
1
3
1
heart
37
20
1
1
3
2
2
kidney
29
14
2
1
7
1
1
1
brain
29
16
3
1
1
1
2
1
lung
33
17
1
1
+ See 241 more…
primary cell
monocyte
2
86
1
15
2
4
2
1
1
CD8-positive, alpha-beta T cell
7
4
30
3
1
common myeloid progenitor, CD34-positive
27
14
CD14-positive monocyte
8
19
B cell
14
10
2
+ See 374 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
7
10
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
1
1
3
4
cardiomyocytes
11
embryonic stem cell
1
1
1
6
+ See 120 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download