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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
DNA binding
138
Transcription
DNA accessibility
4
3D chromatin structure
Date released
84
May, 2021
22
February, 2021
15
February, 2018
9
August, 2021
8
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
131
bigWig
131
tsv
127
bam
20
fastq
7
bedpe bed3+
4
hic
2
bed bed3+
2
ibed
Organism
153
Homo sapiens
Biosample type
1400
tissue
521
primary cell
153
in vitro differentiated cells
147
cell line
7
stem cell
Organ
12
connective tissue
7
embryo
2
epithelium
1
adipose tissue
1
heart
Project
153
AMP
Genome assembly (visualization)
135
hg19
127
GRCh38
4
hg18
Lab
146
AMP-T2D consortium
5
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
98
inconsistent ontology term
2
audit script error
assay_slims!
DNA binding
DNA accessibility
BIOSAMPLE
ASSAY
153 results
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total RNA-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
cardiomyocytes (cardiac muscle cell)
3
2
2
2
induced pluripotent stem cell
9
embryonic stem cell
7
1
neural progenitor cell
7
adipocyte
5
1
pancreatic endoderm
4
1
definitive endodermal cell
2
1
lymphocyte of B lineage (iPSC)
1
1
1
primitive gut cell
2
1
endocrine cell
2
immature adipocyte
2
posterior foregut
2
Posterior foregut
1
cardiac fibroblast
1
endothelial cell
1
hematopoietic multipotent progenitor cell
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
islet precursor cell
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
osteoblast
1
preadipocyte
1
smooth muscle cell
1
stem cell
1
white fat cell
1
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