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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
total RNA-seq
10
ATAC-seq
4
STARR-seq
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
79
Transcription
12
DNA accessibility
3
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Date released
62
February, 2021
23
August, 2021
6
February, 2023
5
January, 2019
4
March, 2020
4
October, 2019
2
March, 2023
1
December, 2018
1
January, 2018
1
May, 2020
1
November, 2018
1
October, 2022
Available data
80
bam
80
tsv
73
bigWig
11
bed narrowPeak
7
fastq
3
bed bed3+
2
bigBed narrowPeak
1
bed bed3
1
bed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
bigBed broadPeak
1
hdf5
1
hic
1
txt
1
vcf
Organism
107
Homo sapiens
Biosample type
1781
tissue
780
primary cell
111
cell line
88
in vitro differentiated cells
6
stem cell
Organ
60
artery
60
blood vessel
60
heart
60
vasculature
23
liver
8
embryo
4
kidney
3
epithelium
3
pancreas
1
blood
1
bodily fluid
1
mammary gland
Project
104
AMP
5
T1D
2
community
Genome assembly (visualization)
83
hg19
81
GRCh38
Lab
89
AMP-T2D consortium
15
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
inconsistent assembly
assay_slims!
DNA binding
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
111 results
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Clear Filters
total RNA-seq
ATAC-seq
STARR-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
smooth muscle cell of the coronary artery
52
8
HepG2
14
1
2
2
2
1
1
H1-hESC
8
EndoC_BH1
3
2
1
EndoC-BH1
1
1
HEK293T
2
Panc1
1
1
early embryonic cell
2
glomerular visceral epithelial cell
1
1
GM12878
1
MCF-7
1
MIN6
1
fibroblast cell line
1
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