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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
DNase-seq
2
ATAC-seq
2
total RNA-seq
1
FAIRE-seq
1
Hi-C
Assay category
DNA binding
7
DNA accessibility
2
Transcription
1
3D chromatin structure
Date released
147
May, 2020
134
May, 2022
88
February, 2023
85
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
31
July, 2019
24
June, 2019
10
October, 2019
8
January, 2021
7
August, 2020
6
August, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
7
bam
5
bed narrowPeak
5
bigWig
3
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
tsv
1
hic
1
tar
Organism
10
Homo sapiens
Biosample type
47
tissue
10
primary cell
8
in vitro differentiated cells
7
cell line
Organ
9
epithelium
4
blood vessel
4
kidney
4
vasculature
4
vein
1
liver
Project
10
AMP
Genome assembly (visualization)
8
hg19
6
GRCh38
Lab
10
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
assay_slims!
DNA binding
organ_slims!
gonad
BIOSAMPLE
ASSAY
10 results
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DNase-seq
ATAC-seq
total RNA-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
2
1
1
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
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