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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
394
ChIP-seq
104
total RNA-seq
3
ATAC-seq
2
DNase-seq
1
Hi-C
Assay category
394
DNA binding
104
Transcription
5
DNA accessibility
1
3D chromatin structure
DNA methylation
Target of assay
351
transcription factor
88
recombinant protein
63
RNA binding protein
30
chromatin remodeller
26
histone
26
histone modification
14
narrow histone mark
12
broad histone mark
12
control
2
other context
2
other post-translational modification
Date released
256
November, 2017
78
February, 2021
56
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
20
October, 2019
12
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
581
bam
521
bigWig
426
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
1
txt
1
vcf
Organism
504
Homo sapiens
Biosample type
1612
tissue
514
primary cell
504
cell line
241
in vitro differentiated cells
3
stem cell
Organ
319
liver
56
pancreas
55
blood
55
bodily fluid
52
artery
52
blood vessel
52
heart
52
vasculature
50
epithelium
12
kidney
8
embryo
Project
500
AMP
4
T1D
Genome assembly (visualization)
500
hg19
439
GRCh38
Lab
490
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
58
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_slims!
DNA methylation
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
504 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
HepG2
314
5
GM12878
54
1
smooth muscle cell of the coronary artery
52
EndoC_BH1
13
33
2
H1-hESC
8
Panc1
6
1
1
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
RCC 7860 vector
2
1
early embryonic cell
2
glomerular visceral epithelial cell
1
1
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