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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
465
ChIP-seq
10
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
465
DNA binding
Transcription
12
DNA accessibility
1
DNA methylation
Target of assay
349
transcription factor
89
recombinant protein
76
control
64
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
broad histone mark
17
narrow histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
61
November, 2018
27
December, 2018
25
October, 2019
18
January, 2019
17
February, 2021
14
November, 2019
1
March, 2020
1
May, 2021
Available data
478
bam
422
fastq
418
bigWig
404
bed narrowPeak
355
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
6
tsv
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
478
Homo sapiens
Biosample type
984
tissue
478
cell line
357
primary cell
164
in vitro differentiated cells
3
stem cell
Organ
361
liver
60
blood
60
bodily fluid
30
pancreas
17
epithelium
14
artery
14
blood vessel
14
heart
14
vasculature
11
kidney
Project
476
AMP
2
T1D
Genome assembly (visualization)
405
hg19
359
GRCh38
Lab
478
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_slims!
Transcription
BIOSAMPLE
ASSAY
478 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
359
1
1
GM12878
60
EndoC_BH1
15
1
Panc1
13
1
smooth muscle cell of the coronary artery
6
8
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
iPSC derived cell line
2
glomerular visceral epithelial cell
1
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