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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
25
ATAC-seq
9
DNase-seq
6
WGBS
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
RNA microarray
1
RRBS
Assay category
481
Transcription
DNA binding
34
DNA accessibility
7
DNA methylation
3D chromatin structure
Date released
455
February, 2021
17
July, 2019
14
February, 2023
8
August, 2017
6
June, 2019
6
November, 2020
5
August, 2021
3
October, 2019
2
April, 2018
2
February, 2020
2
July, 2018
2
March, 2020
2
May, 2021
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
494
bigWig
491
bam
478
tsv
17
bed narrowPeak
15
bed bed3+
13
bigBed narrowPeak
11
fastq
9
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
529
Homo sapiens
Biosample type
473
tissue
30
in vitro differentiated cells
26
primary cell
1
stem cell
Organ
719
pancreas
530
connective tissue
418
adipose tissue
387
epithelium
301
kidney
256
heart
235
liver
159
bone element
129
vasculature
126
blood vessel
107
artery
65
brain
56
eye
52
limb
51
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
3
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
529
AMP
1
T1D
Genome assembly (visualization)
512
hg19
491
GRCh38
Lab
525
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
assay_slims!
3D chromatin structure
DNA binding
BIOSAMPLE
ASSAY
530 results
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total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
Capture-C
RNA microarray
RRBS
tissue
adipose tissue
382
3
3
1
bone tissue
58
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
2
1
subcutaneous abdominal adipose tissue
3
+ See 2 more…
in vitro differentiated cells
adipocyte
5
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
primary cell
osteoblast
5
2
1
1
cardiac fibroblast
3
1
pancreatic stellate cell
4
mesenchymal stem cell of adipose
1
1
adult endothelial progenitor cell
1
+ See 6 more…
stem cell
mesenchymal stem cell
1
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