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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
290
Transcription
270
DNA accessibility
212
DNA binding
47
DNA methylation
3D chromatin structure
1
DNA sequencing
Date released
81
February, 2023
59
August, 2021
59
May, 2021
45
May, 2020
26
May, 2022
16
September, 2020
4
March, 2023
Available data
106
tsv
102
bam
98
bigWig
98
fastq
55
txt
2
bed bed3+
Organism
286
Homo sapiens
Biosample type
190
primary cell
82
tissue
11
cell line
5
in vitro differentiated cells
2
stem cell
Organ
66
pancreas
53
epithelium
49
kidney
29
liver
Project
101
T1D
93
AMP
92
HPAP
4
community
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
AMP-T2D consortium
115
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
4
Anna Gloyn, Oxford
Audit category:
4
inconsistent ontology term
assay_slims!
3D chromatin structure
assay_title!
single cell RNA-seq
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
290 results
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total RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
CD8-positive, alpha-beta T cell
4
+ See 23 more…
tissue
kidney
49
liver
20
islet of Langerhans
12
pancreas
1
cell line
HepG2
9
EndoC-BH1
1
1
in vitro differentiated cells
embryonic stem cell
5
stem cell
SB Ad3.1
1
1
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