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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
14
ChIP-seq
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
45
DNA accessibility
14
DNA binding
Target of assay
20
histone
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
6
October, 2019
3
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
Available data
78
bam
61
bigWig
58
tsv
50
bed narrowPeak
6
tagAlign
1
bigBed narrowPeak
Organism
117
Homo sapiens
Biosample type
66
cell line
49
tissue
2
primary cell
Organ
778
pancreas
678
liver
596
connective tissue
457
adipose tissue
404
epithelium
263
heart
242
kidney
159
bone element
149
vasculature
146
blood vessel
117
artery
68
blood
68
bodily fluid
64
brain
54
eye
33
limb
25
embryo
24
musculature of body
20
lung
18
spleen
17
nerve
16
skeleton
3
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
117
AMP
Genome assembly (visualization)
104
GRCh38
69
hg19
Lab
117
AMP-T2D consortium
assay_slims!
3D chromatin structure
assay_title!
DNase-seq
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
117 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
3
tibial artery
1
1
5
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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