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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
21
ChIP-seq
3
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
Assay category
96
Transcription
21
DNA binding
4
DNA methylation
3D chromatin structure
Target of assay
20
control
1
histone
1
histone modification
1
narrow histone mark
Date released
92
August, 2021
11
April, 2019
6
May, 2019
4
July, 2019
3
February, 2020
3
March, 2020
2
February, 2021
2
June, 2019
1
February, 2023
Available data
98
tsv
20
bam
2
bed bedMethyl
2
bigBed bedMethyl
2
tagAlign
1
bed narrowPeak
1
bigWig
Organism
124
Homo sapiens
Biosample type
119
tissue
3
primary cell
2
cell line
Organ
301
pancreas
256
liver
221
epithelium
147
kidney
124
heart
117
connective tissue
93
bone element
67
adipose tissue
65
brain
55
eye
39
vasculature
37
blood vessel
37
musculature of body
22
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
124
AMP
Genome assembly (visualization)
GRCh38
185
hg19
Lab
124
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_slims!
3D chromatin structure
assembly!
GRCh38
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
124 results
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single cell RNA-seq
ChIP-seq
pCHi-C
total RNA-seq
RRBS
WGBS
tissue
heart left ventricle
18
7
1
1
2
heart right ventricle
17
2
1
right cardiac atrium
18
1
1
left cardiac atrium
18
aortic valve
4
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primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
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