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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
ChIP-seq
30
total RNA-seq
20
ATAC-seq
4
WGBS
3
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
192
DNA binding
31
Transcription
21
DNA accessibility
6
DNA methylation
3D chromatin structure
1
DNA sequencing
Target of assay
107
control
52
transcription factor
33
histone
33
histone modification
19
narrow histone mark
14
broad histone mark
7
RNA binding protein
2
chromatin remodeller
1
recombinant protein
Date released
98
November, 2017
40
May, 2022
35
August, 2017
32
May, 2020
31
August, 2021
13
December, 2017
2
February, 2021
2
July, 2019
1
February, 2020
1
March, 2020
1
November, 2018
Available data
150
bam
121
fastq
93
bigWig
74
bed narrowPeak
55
tagAlign
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
12
tsv
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
csv
1
vcf
Organism
256
Homo sapiens
Biosample type
131
cell line
122
tissue
2
primary cell
1
in vitro differentiated cells
Organ
303
pancreas
256
liver
222
epithelium
148
kidney
124
heart
117
connective tissue
93
bone element
67
adipose tissue
66
brain
55
eye
40
vasculature
38
blood vessel
37
musculature of body
22
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
8
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
256
AMP
Genome assembly (visualization)
622
hg19
GRCh38
Lab
186
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
8
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assay_slims!
3D chromatin structure
assembly!
GRCh38
BIOSAMPLE
ASSAY
256 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
pCHi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
117
9
2
2
1
tissue
liver
70
20
20
3
1
1
1
right lobe of liver
3
1
1
1
primary cell
hepatocyte
1
1
in vitro differentiated cells
hepatocyte
1
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