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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
22
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
123
DNA binding
24
DNA accessibility
12
Transcription
3D chromatin structure
2
DNA methylation
Target of assay
117
histone
117
histone modification
92
narrow histone mark
25
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
78
October, 2019
25
May, 2019
20
June, 2019
15
November, 2017
14
July, 2019
6
October, 2017
2
November, 2018
1
February, 2023
Available data
156
bigWig
155
bam
141
bed narrowPeak
65
bigBed narrowPeak
43
tagAlign
37
bed broadPeak
28
bigBed broadPeak
22
bed bed3+
17
fastq
12
tsv
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
161
Homo sapiens
Biosample type
143
tissue
18
primary cell
Organ
650
pancreas
622
liver
588
connective tissue
426
adipose tissue
303
epithelium
185
heart
161
brain
160
vasculature
154
blood vessel
128
kidney
96
limb
93
artery
71
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
19
embryo
18
ureter
15
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
161
AMP
Genome assembly (visualization)
217
GRCh38
161
hg19
Lab
161
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
assay_slims!
3D chromatin structure
month_released!
February, 2018
BIOSAMPLE
ASSAY
161 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
RRBS
ATAC-seq
FAIRE-seq
tissue
brain
11
14
1
1
1
temporal lobe
13
1
1
angular gyrus
14
frontal cortex
2
1
1
1
superior frontal gyrus
4
+ See 66 more…
primary cell
choroid plexus epithelial cell
3
1
1
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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