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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
119
ChIP-seq
30
ATAC-seq
2
Capture-C
2
pCHi-C
1
DNase-seq
Assay category
127
Transcription
119
DNA binding
31
DNA accessibility
3D chromatin structure
Target of assay
77
histone
77
histone modification
40
narrow histone mark
37
transcription factor
36
broad histone mark
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
89
May, 2021
49
August, 2017
38
December, 2017
33
August, 2021
31
February, 2018
26
February, 2021
February, 2023
6
October, 2019
5
November, 2019
4
March, 2020
Available data
264
bam
251
bigWig
129
bed narrowPeak
127
tsv
118
fastq
21
bed bed3+
17
bigBed narrowPeak
17
tagAlign
4
bed bedgraph
2
bedpe bed3+
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
281
Homo sapiens
Biosample type
1711
tissue
619
primary cell
527
cell line
281
in vitro differentiated cells
3
stem cell
Organ
64
connective tissue
21
embryo
20
epithelium
14
liver
2
pancreas
1
heart
Project
281
AMP
Genome assembly (visualization)
281
hg19
265
GRCh38
4
hg18
Lab
272
AMP-T2D consortium
5
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
101
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
17
inconsistent control read length
assay_slims!
3D chromatin structure
month_released!
February, 2023
BIOSAMPLE
ASSAY
281 results
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total RNA-seq
ChIP-seq
ATAC-seq
Capture-C
pCHi-C
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
48
7
1
1
neural progenitor cell
7
12
10
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
4
13
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