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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
43
ATAC-seq
18
small RNA-seq
15
RRBS
3
single cell RNA-seq
2
FAIRE-seq
1
snATAC-seq
Assay category
65
Transcription
46
DNA accessibility
15
DNA methylation
3D chromatin structure
Target of assay
3
control
Date released
574
February, 2021
316
May, 2021
281
November, 2017
276
August, 2017
260
May, 2020
212
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
87
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
58
August, 2021
57
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
31
February, 2018
30
December, 2018
26
January, 2019
22
March, 2020
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
2
March, 2019
1
May, 2023
Available data
92
bigWig
90
bam
65
tsv
45
bed narrowPeak
18
fastq
15
bed bedMethyl
15
bigBed bedMethyl
2
bigBed narrowPeak
1
bed bed3+
1
txt
Organism
126
Homo sapiens
Biosample type
99
tissue
27
primary cell
Organ
28
liver
24
pancreas
17
connective tissue
17
heart
14
brain
12
adipose tissue
11
epithelium
11
kidney
8
vasculature
7
blood vessel
6
musculature of body
3
artery
2
pericardium
1
eye
Project
126
AMP
Genome assembly (visualization)
126
hg19
79
GRCh38
Lab
88
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
1
audit script error
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
126 results
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total RNA-seq
ATAC-seq
small RNA-seq
RRBS
single cell RNA-seq
FAIRE-seq
snATAC-seq
tissue
liver
2
20
1
islet of Langerhans
18
1
heart left ventricle
2
2
1
omental fat pad
4
1
subcutaneous adipose tissue
4
1
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primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 16 more…
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