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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
34
DNase-seq
4
total RNA-seq
3
RRBS
2
ATAC-seq
2
small RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
37
DNA accessibility
6
Transcription
3
DNA methylation
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
41
June, 2019
15
August, 2017
6
January, 2019
6
May, 2019
5
July, 2019
4
November, 2018
3
December, 2018
2
March, 2020
1
January, 2018
1
May, 2022
1
October, 2017
Available data
81
bigWig
74
bed narrowPeak
67
bam
60
bigBed narrowPeak
47
bed broadPeak
35
bed bed3+
34
bigBed broadPeak
16
fastq
13
tagAlign
6
tsv
3
bed bedMethyl
3
bigBed bedMethyl
1
txt
Organism
85
Homo sapiens
Biosample type
73
tissue
12
primary cell
Organ
650
pancreas
622
liver
588
connective tissue
426
adipose tissue
303
epithelium
185
heart
161
brain
160
vasculature
154
blood vessel
128
kidney
96
limb
93
artery
71
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
15
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
85
AMP
Genome assembly (visualization)
85
hg19
69
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
ATAC-seq
small RNA-seq
snATAC-seq
tissue
muscle of leg
6
13
skeletal muscle tissue
13
1
2
1
1
1
muscle of arm
17
spleen
12
1
1
psoas muscle
2
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
1
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