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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ATAC-seq
47
total RNA-seq
3
single cell RNA-seq
2
pCHi-C
Assay category
100
DNA accessibility
50
Transcription
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
89
August, 2021
73
September, 2018
68
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
27
December, 2018
27
July, 2019
23
January, 2019
21
March, 2020
20
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
May, 2019
5
September, 2017
4
August, 2018
4
March, 2023
3
June, 2018
2
October, 2018
1
October, 2022
Available data
93
bam
93
bigWig
49
tsv
4
fastq
1
bedpe bed3+
Organism
152
Homo sapiens
Biosample type
tissue
150
primary cell
1
cell line
1
in vitro differentiated cells
Organ
3
epithelium
3
pancreas
1
adipose tissue
1
connective tissue
1
liver
Project
107
AMP
45
T1D
Genome assembly (visualization)
93
hg19
48
GRCh38
Lab
107
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
assay_slims!
3D chromatin structure
biosample_type!
tissue
month_released!
May, 2019
BIOSAMPLE
ASSAY
152 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
pCHi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 26 more…
cell line
HepG2
1
in vitro differentiated cells
white fat cell
1
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