Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
381
ChIP-seq
19
total RNA-seq
2
ATAC-seq
2
DNase-seq
2
STARR-seq
2
pCHi-C
1
RRBS
1
WGBS
1
whole genome sequencing assay
Assay category
381
DNA binding
19
Transcription
4
DNA accessibility
3D chromatin structure
2
DNA methylation
1
DNA sequencing
Target of assay
299
transcription factor
82
recombinant protein
62
control
56
RNA binding protein
33
histone
33
histone modification
21
chromatin remodeller
17
broad histone mark
narrow histone mark
2
other context
2
other post-translational modification
Date released
308
November, 2017
46
November, 2018
30
August, 2021
10
December, 2017
5
December, 2019
5
January, 2019
2
February, 2021
2
June, 2019
1
July, 2019
1
May, 2020
1
October, 2019
Available data
379
bam
369
fastq
340
bigWig
313
bed narrowPeak
298
bigBed narrowPeak
54
bed broadPeak
54
bigBed broadPeak
20
tsv
9
tagAlign
4
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
vcf
Organism
411
Homo sapiens
Biosample type
390
cell line
tissue
11
primary cell
10
in vitro differentiated cells
Organ
452
epithelium
411
liver
395
pancreas
116
connective tissue
91
vasculature
86
blood vessel
78
heart
68
artery
68
blood
68
bodily fluid
50
kidney
29
embryo
15
brain
14
vein
10
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
411
AMP
Genome assembly (visualization)
339
hg19
280
GRCh38
Lab
383
AMP-T2D consortium
28
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
assay_slims!
3D chromatin structure
biosample_type!
tissue
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
411 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
STARR-seq
pCHi-C
RRBS
WGBS
whole genome sequencing assay
cell line
HepG2
369
14
1
2
2
1
1
primary cell
hepatocyte
2
5
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
10
Download