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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
256
ChIP-seq
245
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
25
DNase-seq
17
pCHi-C
9
RRBS
2
small RNA-seq
1
DNAme array
Assay category
434
Transcription
281
DNA accessibility
256
DNA binding
57
DNA methylation
3D chromatin structure
Target of assay
220
histone
220
histone modification
113
broad histone mark
107
narrow histone mark
31
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
51
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
24
July, 2019
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
2
October, 2018
1
November, 2018
Available data
582
bigWig
577
bam
403
fastq
274
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
tagAlign
88
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
27
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
2
csv
1
bed bed3
Organism
1045
Homo sapiens
Biosample type
2589
tissue
1045
primary cell
592
cell line
390
in vitro differentiated cells
10
stem cell
Organ
399
epithelium
343
pancreas
38
connective tissue
36
kidney
vasculature
27
blood vessel
20
vein
18
brain
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
520
AMP
321
HPAP
204
T1D
Genome assembly (visualization)
592
hg19
513
GRCh38
Lab
485
AMP-T2D consortium
321
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
Audit category:
53
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
3D chromatin structure
organ_slims!
vasculature
BIOSAMPLE
ASSAY
1045 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
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