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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
total RNA-seq
213
ChIP-seq
187
single cell RNA-seq
178
ATAC-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
9
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
434
Transcription
236
DNA accessibility
213
DNA binding
57
DNA methylation
3D chromatin structure
Target of assay
185
histone
185
histone modification
97
broad histone mark
88
narrow histone mark
31
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
40
August, 2017
24
July, 2019
13
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
May, 2019
1
November, 2017
1
November, 2018
Available data
582
bigWig
577
bam
403
fastq
274
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
tagAlign
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
27
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
2
csv
1
bed bed3
Organism
957
Homo sapiens
Biosample type
2130
tissue
957
primary cell
373
in vitro differentiated cells
237
cell line
10
stem cell
Organ
338
epithelium
321
pancreas
23
connective tissue
20
kidney
vasculature
11
liver
10
blood vessel
8
blood
8
bodily fluid
7
brain
7
heart
7
vein
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
432
AMP
321
HPAP
204
T1D
Genome assembly (visualization)
510
hg19
428
GRCh38
Lab
397
AMP-T2D consortium
321
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
Audit category:
31
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
assay_slims!
3D chromatin structure
organ_slims!
vasculature
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
957 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
13
12
29
31
Langerhans cell
85
48
pancreatic beta cell
21
13
12
16
16
CD8-positive, alpha-beta T cell
4
33
2
1
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