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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
164
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
288
DNA accessibility
164
DNA binding
58
DNA methylation
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2020
58
September, 2018
48
February, 2021
48
July, 2018
44
June, 2019
43
April, 2018
37
August, 2017
27
July, 2019
24
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
2
August, 2021
2
October, 2018
1
November, 2018
Available data
506
bam
497
bigWig
369
fastq
270
tsv
191
bed narrowPeak
153
zippedFastqFolder
83
bigBed narrowPeak
53
tagAlign
41
bed broadPeak
41
bigBed broadPeak
31
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
963
Homo sapiens
Biosample type
2412
tissue
963
primary cell
639
cell line
335
in vitro differentiated cells
9
stem cell
Organ
364
epithelium
312
pancreas
34
connective tissue
31
kidney
25
vasculature
20
blood vessel
15
brain
14
vein
11
heart
11
liver
10
musculature of body
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
478
AMP
321
HPAP
164
T1D
Genome assembly (visualization)
507
hg19
433
GRCh38
Lab
453
AMP-T2D consortium
321
Klaus Kaestner, Upenn
189
Kyle Gaulton, UCSD
Audit category:
45
inconsistent ontology term
27
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
assay_slims!
3D chromatin structure
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
963 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
9
31
Langerhans cell
85
48
monocyte
54
15
44
1
1
pancreatic beta cell
21
23
12
9
16
exocrine cell
39
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