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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
total RNA-seq
4
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
RRBS
Assay category
5
Transcription
4
DNA binding
3
DNA accessibility
3D chromatin structure
1
DNA methylation
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
1
control
Date released
5
December, 2019
4
August, 2021
2
June, 2019
1
July, 2019
1
October, 2019
Available data
12
bam
10
bigWig
6
bed narrowPeak
5
bed bed3+
5
tsv
4
tagAlign
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
13
Homo sapiens
Biosample type
399
cell line
360
tissue
15
in vitro differentiated cells
13
primary cell
Organ
399
epithelium
343
pancreas
38
connective tissue
36
kidney
33
vasculature
27
blood vessel
20
vein
18
brain
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
13
AMP
Genome assembly (visualization)
12
hg19
11
GRCh38
Lab
13
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
13 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
RRBS
primary cell
hepatocyte
5
4
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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