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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
total RNA-seq
2
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
22
DNA binding
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
21
histone
21
histone modification
12
narrow histone mark
9
broad histone mark
1
control
Date released
13
November, 2017
7
October, 2017
3
October, 2019
2
July, 2019
2
March, 2020
1
February, 2023
Available data
bam
214
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
21
fastq
9
tsv
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
28
Homo sapiens
Biosample type
27
tissue
1
primary cell
Organ
181
pancreas
176
heart
160
kidney
144
epithelium
89
bone element
83
connective tissue
76
liver
46
adipose tissue
43
vasculature
42
blood vessel
37
artery
35
eye
31
musculature of body
28
brain
20
lung
9
blood
9
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
limb
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
28
AMP
Genome assembly (visualization)
6
hg19
2
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
1
missing controlled_by
assay_slims!
3D chromatin structure
files.file_type!
bam
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
ATAC-seq
RRBS
pCHi-C
tissue
brain
7
1
1
cingulate gyrus
6
layer of hippocampus
3
substantia nigra
2
Ammon's horn
1
+ See 6 more…
primary cell
choroid plexus epithelial cell
1
See all biosamples
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