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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
single cell RNA-seq
66
ATAC-seq
59
total RNA-seq
19
ChIP-seq
16
snATAC-seq
5
STARR-seq
4
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
174
Transcription
82
DNA accessibility
19
DNA binding
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
267
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
59
October, 2019
59
September, 2020
58
May, 2020
47
September, 2023
40
May, 2024
38
March, 2020
25
February, 2020
19
April, 2020
18
July, 2019
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
4
July, 2018
4
March, 2023
3
March, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
November, 2018
1
October, 2022
1
September, 2018
Available data
123
tsv
106
bed narrowPeak
64
xls
57
txt
bam
47
bigWig
24
tagAlign
5
bed bed3+
1
vcf
Organism
284
Homo sapiens
Biosample type
246
tissue
35
cell line
5
in vitro differentiated cells
Organ
129
kidney
92
heart
30
liver
19
lung
6
blood vessel
6
vasculature
5
connective tissue
3
pancreas
2
artery
2
epithelium
1
adipose tissue
Project
267
AMP
19
LungMap
Genome assembly (visualization)
64
GRCh38
18
hg19
Lab
127
Katalin Susztak, Upenn
102
AMP-T2D consortium
34
Bing Ren, UCSD
19
Xin Sun, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
3D chromatin structure
files.file_type!
bam
BIOSAMPLE
ASSAY
286 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
lung
9
10
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 12 more…
cell line
HepG2
9
18
2
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
neural progenitor cell
1
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