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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
6
single cell RNA-seq
3
total RNA-seq
1
GRO-seq
1
RRBS
1
pCHi-C
Assay category
35
DNA accessibility
9
Transcription
3D chromatin structure
1
DNA methylation
Date released
35
February, 2023
6
August, 2021
3
February, 2020
1
January, 2018
1
July, 2019
1
March, 2020
Available data
bam
182
bigWig
147
bed narrowPeak
83
bigBed narrowPeak
82
tsv
33
fastq
17
bed broadPeak
17
bigBed broadPeak
14
bed bed3+
6
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
1
tar
Organism
47
Homo sapiens
Biosample type
45
tissue
1
in vitro differentiated cells
1
primary cell
Organ
248
pancreas
209
kidney
199
epithelium
179
heart
106
liver
93
bone element
90
connective tissue
54
eye
49
adipose tissue
46
vasculature
45
blood vessel
40
brain
39
artery
33
musculature of body
20
lung
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
ovary
4
limb
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
47
AMP
Genome assembly (visualization)
35
GRCh38
1
hg18
1
hg19
Lab
47
AMP-T2D consortium
assay_slims!
3D chromatin structure
files.file_type!
bam
BIOSAMPLE
ASSAY
47 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
GRO-seq
RRBS
pCHi-C
tissue
coronary artery
35
1
aorta
4
1
pulmonary artery
2
ascending aorta
1
tibial artery
1
in vitro differentiated cells
pancreatic endoderm
1
primary cell
choroid plexus epithelial cell
1
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