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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
5
STARR-seq
4
ChIP-seq
1
ATAC-seq
Assay category
10
Transcription
4
DNA binding
3D chromatin structure
1
DNA accessibility
DNA sequencing
Target of assay
4
control
Date released
19
August, 2021
1
March, 2019
Available data
bed narrowPeak
14
bigWig
10
tsv
Organism
20
Homo sapiens
Biosample type
18
cell line
2
tissue
Organ
15
liver
2
kidney
2
pancreas
Project
20
AMP
Genome assembly (visualization)
1
GRCh38
1
hg19
Lab
2343
AMP-T2D consortium
321
Klaus Kaestner, Upenn
211
Kyle Gaulton, UCSD
77
Katalin Susztak, Upenn
47
KPMP
20
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
3
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
3D chromatin structure
DNA sequencing
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
20 results
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total RNA-seq
STARR-seq
ChIP-seq
ATAC-seq
cell line
HepG2
9
2
4
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
1
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