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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
5
STARR-seq
4
ChIP-seq
1
ATAC-seq
1
whole genome sequencing assay
Assay category
10
Transcription
4
DNA binding
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
4
control
Date released
20
August, 2021
1
March, 2019
Available data
bed narrowPeak
14
bigWig
10
tsv
1
vcf
Organism
21
Homo sapiens
Biosample type
19
cell line
2
tissue
Organ
16
liver
2
kidney
2
pancreas
Project
21
AMP
Genome assembly (visualization)
1
GRCh38
1
hg19
Lab
2343
AMP-T2D consortium
321
Klaus Kaestner, Upenn
211
Kyle Gaulton, UCSD
77
Katalin Susztak, Upenn
47
KPMP
21
Bing Ren, UCSD
20
Karen Mohlke, UNC
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
3
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
3D chromatin structure
files.file_type!
bed narrowPeak
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
21 results
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total RNA-seq
STARR-seq
ChIP-seq
ATAC-seq
whole genome sequencing assay
cell line
HepG2
9
2
4
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
1
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