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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
490
ChIP-seq
257
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1227
Transcription
490
DNA binding
286
DNA accessibility
38
DNA methylation
3D chromatin structure
Target of assay
281
histone modification
280
histone
201
narrow histone mark
187
control
79
broad histone mark
24
transcription factor
3
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
262
August, 2017
227
August, 2021
194
October, 2019
193
May, 2020
120
July, 2018
95
February, 2023
71
July, 2019
66
May, 2022
47
September, 2023
40
May, 2021
39
November, 2019
33
March, 2020
29
October, 2018
25
February, 2020
25
November, 2017
22
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
15
May, 2023
12
December, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
4
December, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1907
bam
1732
bigWig
1076
tsv
944
bed narrowPeak
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2157
Homo sapiens
Biosample type
2160
tissue
969
primary cell
373
in vitro differentiated cells
303
cell line
10
stem cell
Organ
537
connective tissue
478
adipose tissue
439
pancreas
311
liver
211
kidney
182
heart
158
bone element
149
brain
70
blood vessel
70
vasculature
53
eye
48
artery
38
musculature of body
34
limb
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2063
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1264
GRCh38
1251
hg19
Lab
1851
AMP-T2D consortium
141
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
23
missing controlled_by
assay_slims!
3D chromatin structure
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
2160 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
298
71
68
7
4
1
4
adipose tissue
382
1
2
3
1
liver
167
107
20
1
3
1
1
1
kidney
49
9
75
64
6
1
bone element
84
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