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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
23
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
1
RRBS
1
WGBS
1
pCHi-C
Assay category
43
DNA accessibility
23
DNA binding
9
Transcription
3D chromatin structure
2
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
10
February, 2021
10
October, 2019
6
August, 2021
3
February, 2020
2
July, 2019
1
March, 2020
Available data
185
bam
bigWig
133
bed narrowPeak
83
bigBed narrowPeak
68
tsv
17
bed broadPeak
17
bigBed broadPeak
11
bed bed3+
6
fastq
6
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
1
tar
Organism
78
Homo sapiens
Biosample type
62
tissue
10
cell line
6
primary cell
Organ
315
pancreas
222
kidney
217
epithelium
166
heart
166
liver
114
connective tissue
101
bone element
78
vasculature
77
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
27
limb
22
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
5
gonad
5
ovary
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
78
AMP
Genome assembly (visualization)
43
GRCh38
9
hg19
Lab
78
AMP-T2D consortium
assay_slims!
3D chromatin structure
files.file_type!
bigWig
BIOSAMPLE
ASSAY
78 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
RRBS
WGBS
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
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cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
choroid plexus epithelial cell
1
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