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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
46
ATAC-seq
9
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
99
DNA binding
56
DNA accessibility
3D chromatin structure
2
DNA methylation
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
50
May, 2019
46
October, 2019
35
February, 2023
14
February, 2021
5
June, 2019
4
July, 2019
3
November, 2017
Available data
180
bam
148
bigWig
129
bed narrowPeak
79
bigBed narrowPeak
tsv
13
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
6
tagAlign
3
fastq
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
157
Homo sapiens
Biosample type
118
tissue
25
primary cell
14
cell line
Organ
586
liver
520
pancreas
360
epithelium
329
kidney
257
brain
222
heart
205
connective tissue
163
vasculature
157
blood vessel
111
limb
101
bone element
90
adipose tissue
83
artery
81
musculature of body
68
blood
68
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
20
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
157
AMP
Genome assembly (visualization)
129
GRCh38
96
hg19
Lab
157
AMP-T2D consortium
assay_slims!
3D chromatin structure
files.file_type!
tsv
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
157 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
coronary artery
5
36
2
tibial artery
23
1
2
ascending aorta
16
1
thoracic aorta
16
1
aorta
13
2
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
6
8
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