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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
117
ChIP-seq
35
snATAC-seq
33
single cell RNA-seq
16
pCHi-C
10
ATAC-seq
6
WGBS
Assay category
223
Transcription
117
DNA binding
45
DNA accessibility
6
DNA methylation
3D chromatin structure
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
186
May, 2021
76
February, 2023
45
February, 2021
45
May, 2020
40
September, 2020
8
January, 2021
7
August, 2020
Available data
225
bigWig
180
bam
169
fastq
zippedFastqFolder
114
bed narrowPeak
102
tsv
84
tagAlign
2
bed bed3+
Organism
407
Homo sapiens
Biosample type
407
primary cell
349
tissue
54
in vitro differentiated cells
46
cell line
2
stem cell
Organ
69
epithelium
69
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
204
T1D
168
HPAP
35
AMP
Genome assembly (visualization)
215
hg19
190
GRCh38
Lab
AMP-T2D consortium
239
Kyle Gaulton, UCSD
168
Klaus Kaestner, Upenn
Audit category:
27
audit script error
5
inconsistent ontology term
assay_slims!
3D chromatin structure
files.file_type!
zippedFastqFolder
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
407 results
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total RNA-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
pCHi-C
ATAC-seq
WGBS
primary cell
monocyte
53
84
1
Langerhans cell
27
33
pancreatic alpha cell
42
7
6
exocrine cell
39
CD8-positive, alpha-beta T cell
4
33
1
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