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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
1
whole genome sequencing assay
Assay category
60
DNA accessibility
52
Transcription
41
DNA methylation
1
DNA sequencing
Date released
134
May, 2022
19
September, 2020
1
August, 2021
Available data
3392
bam
3124
bigWig
1777
bed narrowPeak
1600
tsv
1357
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
268
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
4
tar
3
bedpe bed3+
2
ibed
1
tagAlign bed3+
1
vcf
Organism
154
Homo sapiens
Biosample type
153
primary cell
1
cell line
Organ
80
epithelium
80
pancreas
1
liver
Project
153
HPAP
1
AMP
Lab
153
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
154 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
whole genome sequencing assay
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
cell line
HepG2
1
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