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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ATAC-seq
52
single cell RNA-seq
41
WGBS
21
snATAC-seq
1
whole genome sequencing assay
Assay category
124
DNA accessibility
52
Transcription
41
DNA methylation
1
DNA sequencing
Date released
134
May, 2022
65
August, 2021
19
September, 2020
Available data
3392
bam
3124
bigWig
1777
bed narrowPeak
1600
tsv
1357
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
268
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
4
tar
3
bedpe bed3+
2
ibed
1
tagAlign bed3+
1
vcf
Organism
218
Homo sapiens
Biosample type
153
primary cell
64
tissue
1
cell line
Organ
80
epithelium
80
pancreas
64
kidney
1
liver
Project
153
HPAP
65
AMP
Genome assembly (visualization)
64
GRCh38
Lab
153
Klaus Kaestner, Upenn
64
Katalin Susztak, Upenn
1
Bing Ren, UCSD
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
218 results
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ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
whole genome sequencing assay
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
kidney
64
cell line
HepG2
1
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