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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
9
total RNA-seq
5
STARR-seq
1
whole genome sequencing assay
Assay category
18
DNA binding
9
Transcription
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
33
August, 2021
Available data
14
bed narrowPeak
14
bigWig
9
tsv
1
vcf
Organism
33
Homo sapiens
Biosample type
33
cell line
Organ
30
liver
2
kidney
pancreas
Project
33
AMP
Genome assembly (visualization)
14
hg19
Lab
3165
AMP-T2D consortium
292
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
33
Bing Ren, UCSD
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
Audit category:
1
inconsistent ontology term
assay_slims!
3D chromatin structure
organ_slims!
pancreas
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
total RNA-seq
STARR-seq
whole genome sequencing assay
cell line
HepG2
18
9
2
1
HEK293T
2
Synthesized DNA
1
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