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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
53
ChIP-seq
4
ATAC-seq
2
Capture-C
2
total RNA-seq
1
snATAC-seq
Assay category
53
DNA binding
3D chromatin structure
5
DNA accessibility
2
Transcription
Target of assay
25
histone
25
histone modification
19
transcription factor
13
narrow histone mark
12
broad histone mark
9
control
2
RNA binding protein
Date released
33
August, 2017
15
December, 2017
5
August, 2021
4
February, 2023
February, 2021
2
May, 2021
2
September, 2017
1
May, 2022
Available data
2611
bam
2404
bigWig
1585
bed narrowPeak
1300
fastq
1041
tsv
833
bigBed narrowPeak
390
tagAlign
153
zippedFastqFolder
116
bed broadPeak
79
bigBed broadPeak
72
txt
64
xls
62
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
10
bed bed3
4
tar
3
bed bedgraph
3
bedpe bed3+
2
csv
2
ibed
1
tagAlign bed3+
1
vcf
Organism
62
Homo sapiens
Biosample type
29
tissue
25
in vitro differentiated cells
5
primary cell
3
stem cell
Organ
21
pancreas
17
connective tissue
6
liver
4
adipose tissue
3
embryo
3
epithelium
1
musculature of body
Project
62
AMP
Genome assembly (visualization)
62
hg19
53
GRCh38
Lab
58
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
14
missing controlled_by
Audit category:
10
inconsistent control read length
assay_slims!
3D chromatin structure
month_released!
February, 2021
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
62 results
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Clear Filters
ChIP-seq
ATAC-seq
Capture-C
total RNA-seq
snATAC-seq
tissue
islet of Langerhans
21
white adipose tissue
4
liver
3
skeletal muscle tissue
1
in vitro differentiated cells
adipocyte
7
1
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
+ See 3 more…
primary cell
hepatocyte
3
CD8-positive, alpha-beta T cell
2
stem cell
hESC
3
See all biosamples
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