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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
12
total RNA-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
DNase-seq
1
RNA microarray
Assay category
73
DNA binding
15
Transcription
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
February, 2021
57
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
55
bam
44
fastq
38
bigWig
15
tsv
12
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
5
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bedpe bed3+
1
bigBed broadPeak
Organism
103
Homo sapiens
Biosample type
101
tissue
2
primary cell
1
in vitro differentiated cells
Organ
901
pancreas
782
liver
464
epithelium
289
heart
264
kidney
253
brain
210
connective tissue
158
vasculature
154
blood vessel
104
adipose tissue
80
limb
73
artery
69
blood
69
bodily fluid
54
eye
47
musculature of body
43
nerve
37
embryo
25
spleen
20
lung
20
vein
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
104
AMP
Genome assembly (visualization)
39
hg19
37
GRCh38
Lab
104
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
3D chromatin structure
month_released!
February, 2021
June, 2019
BIOSAMPLE
ASSAY
104 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
DNase-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
12
5
1
1
1
omental fat pad
11
5
1
1
1
white adipose tissue
12
adipose tissue
2
1
3
3
1
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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