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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
26
ChIP-seq
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
26
DNA binding
9
Transcription
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
narrow histone mark
6
control
Date released
39
June, 2019
19
August, 2017
6
July, 2019
5
May, 2019
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
57
bigWig
51
bam
49
bed narrowPeak
41
bed broadPeak
41
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
10
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
77
Homo sapiens
Biosample type
67
tissue
10
primary cell
Organ
832
pancreas
724
liver
435
epithelium
330
kidney
284
heart
195
connective tissue
166
brain
139
vasculature
134
blood vessel
97
limb
93
adipose tissue
77
musculature of body
69
artery
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
14
vein
9
bone element
8
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
77
AMP
Genome assembly (visualization)
60
hg19
48
GRCh38
Lab
77
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
assay_slims!
3D chromatin structure
month_released!
February, 2021
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
77 results
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DNase-seq
ChIP-seq
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
15
1
4
1
1
1
1
muscle of leg
13
5
1
muscle of arm
17
psoas muscle
2
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
5
1
1
skeletal muscle cell
1
1
1
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