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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
234
total RNA-seq
222
ChIP-seq
184
single cell RNA-seq
178
ATAC-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
2
DNase-seq
1
DNAme array
1
RRBS
Assay category
418
Transcription
236
DNA accessibility
222
DNA binding
49
DNA methylation
3D chromatin structure
Target of assay
190
histone
190
histone modification
101
broad histone mark
89
narrow histone mark
32
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
40
August, 2017
July, 2019
20
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
2
October, 2018
1
May, 2019
1
November, 2018
Available data
591
bam
591
bigWig
409
fastq
295
bed narrowPeak
252
tsv
153
zippedFastqFolder
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
33
bed bed3+
2
csv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
942
Homo sapiens
Biosample type
2129
tissue
942
primary cell
373
in vitro differentiated cells
303
cell line
10
stem cell
Organ
327
epithelium
321
pancreas
16
connective tissue
13
kidney
10
liver
9
vasculature
8
blood
8
blood vessel
8
bodily fluid
7
vein
3
brain
2
heart
2
musculature of body
1
bone element
1
bone marrow
1
eye
Project
417
AMP
321
HPAP
204
T1D
Genome assembly (visualization)
490
hg19
412
GRCh38
Lab
382
AMP-T2D consortium
321
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
Audit category:
29
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
assay_slims!
3D chromatin structure
month_released!
July, 2019
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
942 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
DNase-seq
DNAme array
RRBS
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
13
12
29
31
Langerhans cell
85
48
pancreatic beta cell
21
13
12
16
16
CD8-positive, alpha-beta T cell
4
33
2
1
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