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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
total RNA-seq
108
ATAC-seq
65
ChIP-seq
43
single cell RNA-seq
1
pCHi-C
Assay category
239
Transcription
108
DNA accessibility
65
DNA binding
Target of assay
39
histone
39
histone modification
29
narrow histone mark
26
control
10
broad histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
316
August, 2021
309
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
100
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
November, 2019
59
September, 2020
54
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
34
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
4
August, 2018
4
March, 2019
4
March, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
347
bam
323
bigWig
238
tsv
64
tagAlign
61
fastq
39
bed narrowPeak
6
bigBed narrowPeak
4
bed broadPeak
Organism
413
Homo sapiens
Biosample type
222
tissue
190
primary cell
1
cell line
Organ
194
liver
44
pancreas
33
epithelium
16
brain
3
connective tissue
1
adipose tissue
1
spleen
Project
368
AMP
45
T1D
Genome assembly (visualization)
322
hg19
270
GRCh38
Lab
367
AMP-T2D consortium
45
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
8
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
413 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
tissue
liver
143
50
brain
15
islet of Langerhans
6
1
body of pancreas
4
cerebellum (Hemisphere)
1
+ See 2 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
pancreatic delta cell
7
pancreatic acinar cell
6
+ See 34 more…
cell line
HepG2
1
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