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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
44
total RNA-seq
19
WGBS
18
small RNA-seq
15
RRBS
9
DNase-seq
6
ATAC-seq
4
single cell RNA-seq
3
FAIRE-seq
Assay category
70
DNA binding
66
Transcription
34
DNA methylation
18
DNA accessibility
3D chromatin structure
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
316
August, 2021
309
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
100
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
November, 2019
59
September, 2020
54
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
34
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
4
August, 2018
4
March, 2019
4
March, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
169
bam
161
bigWig
88
fastq
80
bed narrowPeak
75
bigBed narrowPeak
65
tsv
30
bed bedMethyl
30
bigBed bedMethyl
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
1
csv
Organism
188
Homo sapiens
Biosample type
99
tissue
61
cell line
28
primary cell
Organ
62
liver
25
heart
18
connective tissue
17
brain
15
blood
15
bodily fluid
13
adipose tissue
13
pancreas
11
epithelium
11
kidney
10
vasculature
9
blood vessel
9
spleen
6
musculature of body
3
artery
2
pericardium
1
eye
1
limb
Project
188
AMP
Genome assembly (visualization)
158
GRCh38
158
hg19
Lab
188
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
188 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
small RNA-seq
RRBS
DNase-seq
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
4
1
2
liver
4
2
1
2
spleen
6
2
1
body of pancreas
2
2
2
2
omental fat pad
4
1
1
+ See 26 more…
cell line
HepG2
45
1
GM12878
15
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 17 more…
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